Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | DW150_18255 | Not Available | + | 4335886 - 4337169 | 48817.1 |
| silent information regulator protein sir2 | DW150_18260 | Not Available | + | 4337185 - 4339038 | 69541.1 |
| glycoside hydrolase | DW150_18265 | Not Available | + | 4339152 - 4342439 | 123035.0 |
| glycoside hydrolase family 88 protein | DW150_18270 | Not Available | + | 4342580 - 4343713 | 43976.1 |
| beta-galactosidase | DW150_18275 | Not Available | - | 4343832 - 4345946 | 81063.3 |
| glycoside hydrolase | DW150_18280 | Not Available | - | 4345925 - 4348279 | 89302.7 |
| beta-glucuronidase | DW150_18285 | Not Available | + | 4348491 - 4351358 | 110040.0 |
| rhamnogalacturonan acetylesterase | DW150_18290 | Not Available | + | 4351377 - 4352651 | 47788.3 |
| glycoside hydrolase family 28 protein | DW150_18295 | Not Available | + | 4352669 - 4354153 | 54896.3 |
| duf4450 domain-containing protein | DW150_18300 | Not Available | + | 4354131 - 4354829 | 26036.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
