Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf2520 domain-containing protein | DW150_18200 | Not Available | + | 4322069 - 4322875 | 29751.3 |
| 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase | DW150_18205 | Not Available | + | 4322881 - 4323399 | 19125.2 |
| septum formation protein maf | DW150_18210 | Not Available | + | 4323417 - 4323998 | 21720.2 |
| 2-hydroxyacid dehydrogenase | DW150_18215 | Not Available | + | 4324064 - 4325071 | 37593.4 |
| duf3843 family protein | DW150_18220 | Not Available | - | 4325068 - 4326249 | 46417.3 |
| duf2721 domain-containing protein | DW150_18225 | Not Available | + | 4326368 - 4326757 | 14567.4 |
| mfs transporter | DW150_18230 | Not Available | - | 4326759 - 4327934 | 42841.9 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_18240 | Not Available | + | 4331269 - 4333407 | 79372.8 |
| hypothetical protein | DW150_18245 | Not Available | + | 4333497 - 4333814 | 12163.9 |
| alpha-l-rhamnosidase | DW150_18250 | Not Available | + | 4334062 - 4335843 | 66622.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
