Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sdr family nad(p)-dependent oxidoreductase | DW150_18150 | Not Available | + | 4314059 - 4314817 | 27232.0 |
| alpha-amlyase | DW150_18155 | Not Available | - | 4314913 - 4315161 | 9267.24 |
| sodium ion-translocating decarboxylase subunit beta | DW150_18160 | Not Available | - | 4315336 - 4316496 | 40880.4 |
| acetyl-coa carboxylase biotin carboxyl carrier protein subunit | DW150_18165 | Not Available | - | 4316498 - 4316929 | 15152.5 |
| lamin tail domain-containing protein | DW150_18170 | Not Available | - | 4316953 - 4317882 | 34102.0 |
| acyl-coa carboxylase subunit beta | DW150_18175 | Not Available | - | 4317910 - 4319463 | 56473.9 |
| methylmalonyl-coa epimerase | DW150_18180 | Not Available | - | 4319566 - 4319979 | 14910.1 |
| gnat family n-acetyltransferase | DW150_18185 | Not Available | - | 4320136 - 4321158 | 40054.0 |
| nad(p)h nitroreductase | DW150_18190 | Not Available | + | 4321204 - 4321740 | 20051.4 |
| hypothetical protein | DW150_18195 | Not Available | + | 4321743 - 4322069 | 11771.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
