Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_18095 | Not Available | - | 4302888 - 4303931 | 41729.4 |
| duf1016 family protein | DW150_18100 | Not Available | - | 4303940 - 4305235 | 48984.5 |
| site-specific integrase | DW150_18105 | Not Available | - | 4305299 - 4306582 | 50282.2 |
| ph domain-containing protein | DW150_18115 | Not Available | - | 4307398 - 4307841 | 16694.8 |
| hypothetical protein | DW150_18120 | Not Available | - | 4308010 - 4308444 | 16925.9 |
| crp/fnr family transcriptional regulator | DW150_18125 | Not Available | + | 4308976 - 4309539 | 22255.1 |
| acyltransferase | DW150_18130 | Not Available | + | 4309657 - 4310808 | 43077.8 |
| transcriptional repressor | DW150_18135 | Not Available | - | 4310981 - 4311406 | 16179.7 |
| heavy metal translocating p-type atpase | DW150_18140 | Not Available | - | 4311420 - 4313138 | 62486.3 |
| esterase family protein | DW150_18145 | Not Available | + | 4313236 - 4314054 | 30789.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
