Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| potassium transporter | DW150_17995 | Not Available | + | 4279342 - 4281189 | 68606.8 |
| trka family potassium uptake protein | DW150_18000 | Not Available | + | 4281192 - 4281878 | 25665.0 |
| duf4738 domain-containing protein | DW150_18005 | Not Available | + | 4282093 - 4282662 | 21225.6 |
| hypothetical protein | DW150_18010 | Not Available | + | 4282755 - 4283195 | 16638.3 |
| l-serine ammonia-lyase | DW150_18015 | Not Available | - | 4283374 - 4284582 | 43967.2 |
| metallophosphatase | DW150_18020 | Not Available | - | 4284732 - 4285895 | 44490.9 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_18025 | Not Available | - | 4285943 - 4287457 | 56854.3 |
| susc/raga family tonb-linked outer membrane protein | DW150_18030 | Not Available | - | 4287476 - 4290865 | 126851.0 |
| fecr family protein | DW150_18035 | Not Available | - | 4290881 - 4292050 | 44558.6 |
| rna polymerase sigma-70 factor | DW150_18040 | Not Available | - | 4292154 - 4292705 | 21561.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
