Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transposase | DW150_17940 | Not Available | - | 4266001 - 4266154 | 5806.02 |
| ktsc domain-containing protein | DW150_17950 | Not Available | - | 4266855 - 4267040 | 7242.59 |
| diacylglucosamine hydrolase | DW150_17955 | Not Available | + | 4267446 - 4268036 | 22791.2 |
| susd family outer membrane lipoprotein nanu | DW150_17960 | Not Available | - | 4268246 - 4269820 | 60033.9 |
| tonb-dependent receptor | DW150_17965 | Not Available | - | 4269850 - 4273122 | 120746.0 |
| alpha-l-fucosidase | DW150_17970 | Not Available | - | 4273171 - 4274655 | 57754.6 |
| Trna-glu | Not Available | Not Available | + | 4275099 - 4275173 | Not Available |
| hypothetical protein | DW150_17980 | Not Available | + | 4275316 - 4276605 | 48264.7 |
| deoxyribonuclease iv | DW150_17985 | Not Available | + | 4276648 - 4277484 | 31439.6 |
| trpb-like pyridoxal phosphate-dependent enzyme | DW150_17990 | Not Available | - | 4277800 - 4279164 | 50196.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
