Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pantoate--beta-alanine ligase | DW150_17740 | Not Available | - | 4225527 - 4226375 | 31348.6 |
| glycogen synthase | DW150_17745 | Not Available | + | 4226727 - 4227551 | 31933.0 |
| duf4270 domain-containing protein | DW150_17750 | Not Available | + | 4227571 - 4229001 | 53749.4 |
| duf3127 domain-containing protein | DW150_17755 | Not Available | - | 4229260 - 4229637 | 13929.4 |
| dna polymerase iii subunit beta | DW150_17760 | Not Available | + | 4229791 - 4230915 | 41309.4 |
| 3'-5' exonuclease | DW150_17765 | Not Available | + | 4230967 - 4231743 | 29605.2 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | DW150_17770 | Not Available | + | 4231740 - 4232936 | 43021.2 |
| dna repair protein recn | DW150_17775 | Not Available | + | 4233041 - 4234702 | 62042.1 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | DW150_17780 | Not Available | + | 4234753 - 4235520 | 28121.2 |
| tetratricopeptide repeat protein | DW150_17785 | Not Available | + | 4235557 - 4237257 | 62524.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
