Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf1016 domain-containing protein | DW150_17685 | Not Available | + | 4211320 - 4212438 | 43196.1 |
| hypothetical protein | DW150_17695 | Not Available | - | 4213089 - 4213811 | 28346.1 |
| prevent-host-death protein | DW150_17700 | Not Available | - | 4213828 - 4216476 | 100648.0 |
| fecr family protein | DW150_17705 | Not Available | - | 4216419 - 4217369 | 36430.3 |
| rna polymerase sigma-70 factor | DW150_17710 | Not Available | - | 4217436 - 4218002 | 22166.0 |
| rna-binding transcriptional accessory protein | DW150_17715 | Not Available | + | 4218328 - 4220457 | 79580.4 |
| nad(+) diphosphatase | DW150_17720 | Not Available | + | 4220480 - 4221277 | 30120.2 |
| putative transporter | DW150_17725 | Not Available | + | 4221354 - 4223015 | 59555.2 |
| fructose-1,6-bisphosphatase | DW150_17730 | Not Available | + | 4223025 - 4225025 | 76562.4 |
| aspartate 1-decarboxylase | DW150_17735 | Not Available | - | 4225155 - 4225505 | 12822.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
