Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DW150_17460 | Not Available | - | 4169225 - 4171645 | 91800.3 |
| abc transporter atp-binding protein | DW150_17465 | Not Available | - | 4171645 - 4172355 | 26407.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW150_17470 | Not Available | - | 4172371 - 4173621 | 47799.6 |
| tolc family protein | DW150_17475 | Not Available | - | 4173627 - 4174934 | 50678.0 |
| sigma-54-dependent fis family transcriptional regulator | DW150_17480 | Not Available | + | 4175266 - 4176597 | 50257.9 |
| pas domain-containing protein | DW150_17485 | Not Available | + | 4176603 - 4177925 | 50256.6 |
| gnat family n-acetyltransferase | DW150_17490 | Not Available | - | 4178052 - 4179584 | 59325.0 |
| glutamine synthetase | DW150_17495 | Not Available | + | 4179790 - 4181292 | 56007.0 |
| Trna-gly | Not Available | Not Available | + | 4181413 - 4181488 | Not Available |
| Trna-leu | Not Available | Not Available | + | 4181501 - 4181584 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
