Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW150_17255 | Not Available | - | 4110511 - 4112286 | 67508.8 |
| tonb-dependent receptor | DW150_17260 | Not Available | - | 4112310 - 4115468 | 116586.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_17265 | Not Available | - | 4115939 - 4117909 | 73814.3 |
| tonb-dependent receptor | DW150_17270 | Not Available | - | 4117933 - 4121136 | 118483.0 |
| hypothetical protein | DW150_17275 | Not Available | - | 4121171 - 4121455 | 11158.3 |
| sigma-70 family rna polymerase sigma factor | DW150_17280 | Not Available | - | 4121504 - 4122058 | 21477.1 |
| pectate lyase | DW150_17285 | Not Available | - | 4122245 - 4125331 | 115844.0 |
| polysaccharide lyase | DW150_17290 | Not Available | - | 4125333 - 4127015 | 61298.8 |
| duf3826 domain-containing protein | DW150_17295 | Not Available | - | 4127215 - 4127883 | 25071.4 |
| polysaccharide lyase | DW150_17300 | Not Available | - | 4127908 - 4129641 | 64331.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
