Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| serine acetyltransferase | DW150_16600 | Not Available | - | 3988225 - 3988818 | 22240.5 |
| lipopolysaccharide biosynthesis protein | DW150_16605 | Not Available | - | 3988820 - 3990352 | 57619.9 |
| nucleotide sugar dehydrogenase | DW150_16610 | Not Available | - | 3990448 - 3991794 | 50699.8 |
| tyrosine protein kinase | DW150_16615 | Not Available | - | 3991809 - 3994232 | 90387.3 |
| polysaccharide export protein | DW150_16620 | Not Available | - | 3994270 - 3995070 | 29352.7 |
| hypothetical protein | DW150_16625 | Not Available | - | 3995096 - 3995530 | 16620.7 |
| upxy family transcription antiterminator | DW150_16630 | Not Available | - | 3995548 - 3996198 | 24605.0 |
| site-specific integrase | DW150_16635 | Not Available | - | 3996495 - 3997430 | 36310.9 |
| hth domain-containing protein | DW150_16640 | Not Available | + | 3997911 - 3999482 | 59260.6 |
| hypothetical protein | DW150_16645 | Not Available | + | 3999493 - 4000197 | 26700.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
