Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| laci family dna-binding transcriptional regulator | DW150_01450 | Not Available | - | 407341 - 408414 | 41175.5 |
| sugar kinase | DW150_01455 | Not Available | + | 408658 - 409680 | 37020.8 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | DW150_01460 | Not Available | + | 409787 - 410461 | 23919.2 |
| peptidase | DW150_01465 | Not Available | + | 410715 - 411533 | 29734.7 |
| hypothetical protein | DW150_01470 | Not Available | + | 411547 - 411750 | 7817.92 |
| arac family transcriptional regulator | DW150_01475 | Not Available | + | 412032 - 412865 | 32067.0 |
| isoleucine--trna ligase | DW150_01480 | Not Available | + | 413074 - 416562 | 132278.0 |
| trar/dksa family transcriptional regulator | DW150_01485 | Not Available | + | 416586 - 416966 | 14361.2 |
| lipoprotein signal peptidase | DW150_01490 | Not Available | + | 417076 - 417714 | 24121.8 |
| duf4296 domain-containing protein | DW150_01495 | Not Available | + | 417718 - 418692 | 37285.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
