Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type i pullulanase | DW150_01350 | Not Available | + | 381740 - 383734 | 74534.4 |
| mannonate dehydratase | DW150_01355 | Not Available | + | 383795 - 384973 | 44781.8 |
| patatin | DW150_01360 | Not Available | - | 384956 - 387166 | 81858.4 |
| exonuclease | DW150_01365 | Not Available | + | 387374 - 387862 | 18589.9 |
| yigz family protein | DW150_01370 | Not Available | + | 387895 - 388497 | 22790.6 |
| porin | DW150_01375 | Not Available | + | 388690 - 389703 | 38689.1 |
| excinuclease abc subunit uvrb | DW150_01380 | Not Available | - | 389870 - 391903 | 77685.6 |
| outer membrane protein assembly factor bamd | DW150_01385 | Not Available | + | 392070 - 392906 | 32450.3 |
| rna polymerase rpb6 | DW150_01390 | Not Available | + | 392923 - 393258 | 12965.3 |
| duf4293 family protein | DW150_01395 | Not Available | + | 393508 - 393960 | 16883.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
