Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DW150_01100 | Not Available | + | 323586 - 324263 | 25941.4 |
| sensor histidine kinase | DW150_01105 | Not Available | + | 324264 - 325550 | 49747.0 |
| hypothetical protein | DW150_01110 | Not Available | + | 325654 - 326091 | 16897.4 |
| udp-2,3-diacylglucosamine diphosphatase | DW150_01115 | Not Available | + | 326270 - 327073 | 31189.2 |
| glycosyltransferase | DW150_01120 | Not Available | + | 327070 - 328197 | 43279.1 |
| rna degradosome polyphosphate kinase | DW150_01125 | Not Available | + | 328333 - 330399 | 79741.9 |
| ppx/gppa family phosphatase | DW150_01130 | Not Available | + | 330401 - 331315 | 34434.2 |
| peptidase m28 | DW150_01135 | Not Available | + | 331458 - 333005 | 57360.0 |
| atp synthase subunit beta | DW150_01140 | Not Available | + | 333202 - 334737 | 56123.4 |
| hypothetical protein | DW150_01145 | Not Available | + | 334746 - 335000 | 9086.85 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
