Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW150_00935 | Not Available | - | 293580 - 295199 | 61972.6 |
| hypothetical protein | DW150_00945 | Not Available | + | 296748 - 297296 | 20654.6 |
| n-acetylmuramoyl-l-alanine amidase | DW150_00950 | Not Available | - | 297555 - 298073 | 19593.7 |
| hypothetical protein | DW150_00955 | Not Available | + | 298223 - 298411 | 7412.12 |
| dna-binding protein | DW150_00960 | Not Available | - | 298521 - 299015 | 18040.5 |
| hypothetical protein | DW150_00965 | Not Available | - | 299055 - 299285 | 8342.95 |
| duf4248 domain-containing protein | DW150_00970 | Not Available | - | 299386 - 299580 | 7339.02 |
| duf3987 domain-containing protein | DW150_00975 | Not Available | - | 299783 - 301588 | 67672.4 |
| virulence protein e | DW150_00980 | Not Available | - | 301661 - 302326 | 25232.2 |
| hypothetical protein | DW150_00985 | Not Available | + | 302601 - 302798 | 7949.85 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
