Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_00830 | Not Available | + | 265562 - 266401 | 32300.1 |
| mate family efflux transporter | DW150_00835 | Not Available | + | 266616 - 267908 | 48469.8 |
| phosphoglycerate mutase family protein | DW150_00840 | Not Available | + | 268023 - 268607 | 22877.3 |
| dna-binding response regulator | DW150_00845 | Not Available | - | 268625 - 269395 | 29532.6 |
| alpha-galactosidase | DW150_00850 | Not Available | - | 269446 - 271053 | 60457.4 |
| Trna-pro | Not Available | Not Available | + | 271337 - 271409 | Not Available |
| Trna-phe | Not Available | Not Available | + | 271590 - 271665 | Not Available |
| hypothetical protein | DW150_00870 | Not Available | - | 272084 - 273160 | 40805.7 |
| s9 family peptidase | DW150_00875 | Not Available | - | 273394 - 274431 | 39560.7 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_00880 | Not Available | - | 274464 - 275906 | 53802.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
