Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| right-handed parallel beta-helix repeat-containing protein | DW150_00675 | Not Available | - | 215958 - 217472 | 55846.1 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_00680 | Not Available | - | 217643 - 219262 | 59918.3 |
| tonb-dependent receptor | DW150_00685 | Not Available | - | 219274 - 222345 | 114468.0 |
| response regulator | DW150_00690 | Not Available | - | 222486 - 226646 | 158166.0 |
| arac family transcriptional regulator | DW150_00695 | Not Available | + | 226795 - 227715 | 35143.8 |
| lytic transglycosylase domain-containing protein | DW150_00700 | Not Available | + | 227723 - 228721 | 37375.8 |
| ion transporter | DW150_00705 | Not Available | - | 228747 - 229604 | 32681.8 |
| duf4981 domain-containing protein | DW150_00710 | Not Available | + | 229720 - 232815 | 117515.0 |
| tonb-dependent receptor | DW150_00715 | Not Available | + | 233211 - 235778 | 97396.0 |
| rna polymerase sigma-70 factor | DW150_00720 | Not Available | + | 235833 - 236360 | 20776.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
