Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit n | DW150_00610 | Not Available | + | 204276 - 205697 | 52320.5 |
| glucuronyl hydrolase | DW150_00615 | Not Available | + | 205870 - 207096 | 46757.5 |
| atp-binding protein | DW150_00620 | Not Available | - | 207098 - 207340 | 8950.0 |
| glycoside hydrolase family 28 protein | DW150_00635 | Not Available | + | 207774 - 209180 | 52429.8 |
| gtp-binding protein | DW150_00640 | Not Available | - | 209244 - 210470 | 46830.3 |
| alpha-l-fucosidase | DW150_00645 | Not Available | + | 210605 - 211930 | 50373.9 |
| hypothetical protein | DW150_00655 | Not Available | + | 213418 - 213909 | 18644.6 |
| port family protein | DW150_00660 | Not Available | + | 213942 - 214559 | 22958.1 |
| hypothetical protein | DW150_00665 | Not Available | + | 214635 - 215093 | 17376.1 |
| hypothetical protein | DW150_00670 | Not Available | + | 215148 - 215819 | 26002.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
