Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM13-21
Accession NumberQRLF00000000.1
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW150_00005 | Not Available | - | 296 - 1819 | 57970.0 |
| tonb-dependent receptor | DW150_00010 | Not Available | - | 1837 - 4767 | 108859.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_00015 | Not Available | - | 4995 - 6491 | 56632.5 |
| tonb-dependent receptor | DW150_00020 | Not Available | - | 6504 - 9395 | 106923.0 |
| site-specific integrase | DW150_00030 | Not Available | + | 10065 - 11225 | 45012.8 |
| susc/raga family tonb-linked outer membrane protein | DW150_00040 | Not Available | + | 12653 - 15607 | 108928.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW150_00045 | Not Available | + | 15635 - 17083 | 53273.6 |
| hypothetical protein | DW150_00050 | Not Available | - | 17167 - 17364 | 7797.34 |
| tonb-dependent receptor | DW150_00055 | Not Available | + | 18070 - 20922 | 105731.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_00060 | Not Available | + | 21024 - 22565 | 57979.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
