Parabacteroides merdae strain AM16-50

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae strain AM16-50 is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology and the presence of flagella. This strain is primarily found in the gastrointestinal tract of Homo sapiens, contributing to the complex ecosystem of gut microbiomes. The strain possesses a single replicon, indicating a streamlined genomic organization. Its presence in the gut microbiome suggests a potential role in health and disease, particularly with respect to its association with obesity-associated metabolic alterations (OSA). The interaction of P. merdae with other gut microorganisms may influence various metabolic pathways and impact host health. As an anaerobic organism, P. merdae thrives in low-oxygen environments, which are characteristic of the gastrointestinal tract. This adaptation allows it to coexist with a diverse array of microbial species, participating in essential processes such as fermentation and nutrient absorption. The ecological niche occupied by P. merdae underscores the importance of gut microbiota in maintaining overall health and metabolic homeostasis in humans. The uniqueness of this strain, represented in the accession QRKC00000000.1, highlights the ongoing exploration of gut microbiomes and their implications for human health. Understanding the specific roles of strains like Parabacteroides merdae can provide insights into therapeutic strategies for managing metabolic disorders and enhancing gut health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
Strainstrain AM16-50

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides merdae strain AM16-50
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain AM16-50


Gene Summary

Adenine Count

1246323 bp

Thymine Count

1262000 bp

Guanine Count

1062193 bp

Cytosine Count

1024627 bp

Genome Length

4595261 bp

Protein-coding Genes

3646 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinDW191_04770Not AvailablePositive1220587 - 122232665879.1
duf4962 domain-containing proteinDW191_04775Not AvailablePositive1222474 - 122429468607.6
glucuronyl hydrolaseDW191_04780Not AvailablePositive1224330 - 122554745675.1
arsenate reductase arscDW191_04785Not AvailableNegative1225544 - 122601717456.7
hypothetical proteinDW191_04790Not AvailablePositive1226291 - 12265008195.8
dna gyrase/topoisomerase iv subunit aDW191_04795Not AvailablePositive1226630 - 1229362103761.0
duf3316 domain-containing proteinDW191_04800Not AvailablePositive1229391 - 123026933027.6
peptidase s41DW191_04805Not AvailablePositive1230283 - 123129938814.9
Trna-leuNot AvailableNot AvailablePositive1231383 - 1231467Not Available
zinc abc transporter substrate-binding proteinDW191_04815Not AvailablePositive1231552 - 123245734407.0

Displaying genes 961 – 970 of 3743 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
OsaCausesPMC12415091

Displaying health effects 1 – 1 of 1 in total