Parabacteroides merdae strain AM16-50

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae strain AM16-50 is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology and the presence of flagella. This strain is primarily found in the gastrointestinal tract of Homo sapiens, contributing to the complex ecosystem of gut microbiomes. The strain possesses a single replicon, indicating a streamlined genomic organization. Its presence in the gut microbiome suggests a potential role in health and disease, particularly with respect to its association with obesity-associated metabolic alterations (OSA). The interaction of P. merdae with other gut microorganisms may influence various metabolic pathways and impact host health. As an anaerobic organism, P. merdae thrives in low-oxygen environments, which are characteristic of the gastrointestinal tract. This adaptation allows it to coexist with a diverse array of microbial species, participating in essential processes such as fermentation and nutrient absorption. The ecological niche occupied by P. merdae underscores the importance of gut microbiota in maintaining overall health and metabolic homeostasis in humans. The uniqueness of this strain, represented in the accession QRKC00000000.1, highlights the ongoing exploration of gut microbiomes and their implications for human health. Understanding the specific roles of strains like Parabacteroides merdae can provide insights into therapeutic strategies for managing metabolic disorders and enhancing gut health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
Strainstrain AM16-50

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Parabacteroides merdae strain AM16-50
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain AM16-50 AM16-50.Scaf18, whole genome

Gene Summary

Adenine Count

1246323 bp

Thymine Count

1262000 bp

Guanine Count

1062193 bp

Cytosine Count

1024627 bp

Genome Length

4595261 bp

Protein-coding Genes

3646 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-tyrNot AvailableNot AvailablePositive4013179 - 4013264Not Available
6,7-dimethyl-8-ribityllumazine synthaseDW191_16595Not AvailableNegative4013320 - 401380217444.8
tetratricopeptide repeat proteinDW191_16600Not AvailableNegative4013879 - 401456524903.6
dna replication and repair protein recfDW191_16605Not AvailablePositive4014701 - 401580442468.2
duf721 domain-containing proteinDW191_16610Not AvailablePositive4015801 - 401609411198.7
duf1232 domain-containing proteinDW191_16615Not AvailablePositive4016110 - 401650515007.5
5-formyltetrahydrofolate cyclo-ligaseDW191_16620Not AvailableNegative4016507 - 401706121005.7
s41 family peptidaseDW191_16625Not AvailableNegative4016967 - 401870064317.7
cmp deaminaseDW191_16630Not AvailableNegative4018712 - 401914616142.4
hypothetical proteinDW191_16635Not AvailablePositive4019767 - 402015614704.3

Displaying genes 3241 – 3250 of 3743 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
OsaCausesPMC12415091

Displaying health effects 1 – 1 of 1 in total