Parabacteroides merdae strain AM16-50

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Tannerellaceae

Genus

Parabacteroides

Description

Parabacteroides merdae strain AM16-50 is a Gram-negative, anaerobic bacterium known for its capacity to thrive in environments devoid of oxygen. As part of the diverse microbial community, it plays a significant role in various anaerobic ecosystems, particularly within the gastrointestinal tracts of mammals, where it may contribute to the degradation of complex carbohydrates and the fermentation processes that generate short-chain fatty acids. The anaerobic nature of P. merdae strain AM16-50 suggests that it possesses metabolic pathways adapted to the absence of oxygen, allowing it to utilize alternative electron acceptors during its energy production processes. This strain’s Gram-negative classification indicates a specific cell wall structure characterized by a thin peptidoglycan layer and an outer membrane, which may influence its interactions with other microbial species and its susceptibility to certain antimicrobial agents. The understanding of P. merdae strain AM16-50's metabolic capabilities can provide insights into its potential roles in maintaining gut health and influencing the overall balance of gut microbiota. Further exploration of Parabacteroides merdae strain AM16-50 may reveal its interactions within complex microbial communities and its contributions to nutrient cycling in anaerobic habitats, underscoring the importance of such microorganisms in ecosystem functioning and health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides merdae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgastrointestinal tract; gut microbiomes
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parabacteroides merdae strain AM16-50

Accession NumberQRKC00000000.1

Gene Summary

Adenine Count

1246323 bp

Thymine Count

1262000 bp

Guanine Count

1062193 bp

Cytosine Count

1024627 bp

Genome Length

4595261 bp

Protein-coding Genes

3646 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative endonucleaseDW191_19050Not Available+4520743 - 452106912813.2
hypothetical proteinDW191_19055Not Available+4521066 - 45212878363.05
hypothetical proteinDW191_19060Not Available+4521491 - 452177210801.7
hypothetical proteinDW191_19065Not Available+4521778 - 45219878139.34
AttlNot AvailableNot Available+4522117 - 4522128Not Available
hypothetical proteinDW191_19070Not Available+4522166 - 452264519032.5
hypothetical proteinDW191_19075Not Available+4522664 - 452298712173.5
hypothetical proteinDW191_19080Not Available+4523154 - 45233457582.22
2_nc_021803: site specific recombinase, tyrosineDW191_19085Not Available+4523624 - 452458637632.3
Tyrosine-type recombinase/integraseDW191_19090Not Available+4524592 - 452550034813.1

Displaying genes 11 – 20 of 3743 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites