Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain AM17-44
Accession NumberQRJS00000000.1
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cysteine--trna ligase | DW204_00315 | Not Available | - | 80761 - 82242 | 56143.0 |
| glycoside hydrolase family 97 protein | DW204_00320 | Not Available | - | 82340 - 84280 | 72950.6 |
| alpha-l-arabinofuranosidase | DW204_00325 | Not Available | + | 84394 - 86373 | 74742.5 |
| duf4981 domain-containing protein | DW204_00330 | Not Available | - | 86923 - 90270 | 127283.0 |
| glycoside hydrolase family 92 protein | DW204_00335 | Not Available | - | 90437 - 92662 | 83312.1 |
| glycoside hydrolase family 92 protein | DW204_00340 | Not Available | - | 92690 - 94963 | 86394.3 |
| glycoside hydrolase family 92 protein | DW204_00345 | Not Available | - | 94991 - 97207 | 84124.5 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW204_00350 | Not Available | - | 97358 - 99193 | 69739.4 |
| susc/raga family tonb-linked outer membrane protein | DW204_00355 | Not Available | - | 99217 - 102606 | 124571.0 |
| fecr family protein | DW204_00360 | Not Available | - | 102797 - 103798 | 38429.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
