Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain AM17-44
Accession NumberQRJS00000000.1
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna | Not Available | Not Available | + | 64345 - 65878 | Not Available |
| ribonuclease iii | DW204_00270 | Not Available | + | 64462 - 65481 | 38764.8 |
| duf3108 domain-containing protein | DW204_00275 | Not Available | - | 65623 - 66438 | 31354.9 |
| hypothetical protein | DW204_00280 | Not Available | - | 66435 - 68360 | 73808.9 |
| hypothetical protein | DW204_00285 | Not Available | - | 68370 - 69875 | 57497.0 |
| 6-phosphofructokinase | DW204_00290 | Not Available | + | 70029 - 71039 | 35746.4 |
| tonb-dependent receptor | DW204_00295 | Not Available | + | 71610 - 74708 | 115575.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW204_00300 | Not Available | + | 74722 - 76656 | 73262.8 |
| duf1735 domain-containing protein | DW204_00305 | Not Available | + | 76670 - 78052 | 49924.9 |
| carbohydrate-binding protein | DW204_00310 | Not Available | + | 78116 - 80686 | 97189.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
