Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain AM17-44
Accession NumberQRJS00000000.1
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosome-binding factor rbfa | DW204_00030 | Not Available | - | 7277 - 7612 | 12957.9 |
| hypothetical protein | DW204_00035 | Not Available | - | 7672 - 8271 | 23648.5 |
| methyltransferase | DW204_00040 | Not Available | - | 8276 - 8914 | 24558.6 |
| pyruvate kinase | DW204_00045 | Not Available | - | 8917 - 10377 | 54034.2 |
| type ii 3-dehydroquinate dehydratase | DW204_00050 | Not Available | - | 10388 - 10819 | 16083.2 |
| site-specific tyrosine recombinase xerd | DW204_00055 | Not Available | + | 10885 - 11796 | 35045.6 |
| hypothetical protein | DW204_00060 | Not Available | + | 11942 - 13618 | 61585.8 |
| duf4369 domain-containing protein | DW204_00065 | Not Available | + | 13727 - 14779 | 40578.2 |
| atp-binding protein | DW204_00070 | Not Available | + | 14802 - 16340 | 56017.4 |
| glycosyl hydrolase family 2 | DW204_00075 | Not Available | - | 16362 - 19136 | 104860.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
