Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius strain AM17-44
Accession NumberQRJS00000000.1
Gene Summary
Adenine Count
993827 bp
Thymine Count
973116 bp
Guanine Count
754189 bp
Cytosine Count
808576 bp
Genome Length
3530609 bp
Protein-coding Genes
2788 genes
Non-Coding Genes
110 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | DW204_00525 | Not Available | + | 147154 - 147363 | 7717.62 |
| rok family transcriptional regulator | DW204_00530 | Not Available | - | 147426 - 148634 | 44437.1 |
| cyclically-permuted mutarotase family protein | DW204_00535 | Not Available | + | 148934 - 150016 | 40052.3 |
| n-acetylneuraminate lyase | DW204_00540 | Not Available | + | 150108 - 151025 | 33866.0 |
| n-acylglucosamine 2-epimerase | DW204_00545 | Not Available | + | 151036 - 152220 | 45915.9 |
| mfs transporter | DW204_00550 | Not Available | + | 152259 - 153497 | 44915.7 |
| duf386 domain-containing protein | DW204_00555 | Not Available | + | 153517 - 153963 | 16877.3 |
| sialidase | DW204_00560 | Not Available | + | 153979 - 155601 | 59895.8 |
| is256 family transposase | DW204_00570 | Not Available | - | 156404 - 157636 | 47148.1 |
| hypothetical protein | DW204_00575 | Not Available | - | 158051 - 159430 | 52137.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
