Phocaeicola plebeius strain AM17-44

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola plebeius strain AM17-44 is a Gram-negative, rod-shaped bacterium that is nonsporulating and functions as a chemoheterotroph, deriving its energy from organic compounds. This strain is categorized as an anaerobe, indicating its growth and metabolic processes occur in environments devoid of oxygen. Phocaeicola plebeius strain AM17-44 is part of the complex microbial community found within the intestinal microflora of animals. The presence of such bacteria is essential for maintaining gut health, contributing to digestion, and potentially influencing the overall microbiome balance. The nonsporulating nature of this strain suggests a reliance on stable environmental conditions for survival, as it does not produce spores that can endure extreme conditions. Given its specific habitat within the animal intestine and its anaerobic characteristics, Phocaeicola plebeius strain AM17-44 may play a role in the fermentation of dietary components, contributing to nutrient absorption and metabolic processes that benefit the host. The relationship between this strain and its host's gut environment highlights the intricate dependencies that exist within microbial communities, emphasizing the importance of anaerobic bacteria in maintaining gastrointestinal homeostasis.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola plebeius
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola plebeius strain AM17-44
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola plebeius strain AM17-44

Accession NumberQRJS00000000.1

Gene Summary

Adenine Count

993827 bp

Thymine Count

973116 bp

Guanine Count

754189 bp

Cytosine Count

808576 bp

Genome Length

3530609 bp

Protein-coding Genes

2788 genes

Non-Coding Genes

110 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transcriptional regulatorDW204_00525Not Available+147154 - 1473637717.62
rok family transcriptional regulatorDW204_00530Not Available-147426 - 14863444437.1
cyclically-permuted mutarotase family proteinDW204_00535Not Available+148934 - 15001640052.3
n-acetylneuraminate lyaseDW204_00540Not Available+150108 - 15102533866.0
n-acylglucosamine 2-epimeraseDW204_00545Not Available+151036 - 15222045915.9
mfs transporterDW204_00550Not Available+152259 - 15349744915.7
duf386 domain-containing proteinDW204_00555Not Available+153517 - 15396316877.3
sialidaseDW204_00560Not Available+153979 - 15560159895.8
is256 family transposaseDW204_00570Not Available-156404 - 15763647148.1
hypothetical proteinDW204_00575Not Available-158051 - 15943052137.3

Displaying genes 121 – 130 of 2898 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites