Pontibacter diazotrophicus strain H4X

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter diazotrophicus strain H4X is a Gram-negative bacterium characterized by its rod shape. This organism possesses a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number QRGR00000000.1, providing a reference point for genomic studies and comparisons with related microbial species. As a member of the genus Pontibacter, this strain is likely involved in the nitrogen cycle, particularly in environments where nitrogen fixation is crucial. The ability to fix nitrogen can contribute significantly to soil fertility and ecosystem health, particularly in arid or nutrient-poor environments where this bacterium may thrive. The traits of Pontibacter diazotrophicus strain H4X underscore its potential ecological role. By fixing atmospheric nitrogen, it can enhance soil nutrient availability, supporting plant growth and influencing microbial community dynamics. Understanding the functional capabilities of such microorganisms is essential for exploring their applications in sustainable agriculture and ecosystem management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter diazotrophicus
Strainstrain H4X

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pontibacter diazotrophicus strain H4X Scaffold84_1, whole genome

Gene Summary

Adenine Count

1664667 bp

Thymine Count

1665393 bp

Guanine Count

1536605 bp

Cytosine Count

1530224 bp

Genome Length

6396889 bp

Protein-coding Genes

5241 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDXT99_18450Not AvailableNegative4420909 - 442120211308.3
phzf family phenazine biosynthesis proteinDXT99_18455Not AvailableNegative4421617 - 442240529044.5
dabb family proteinDXT99_18460Not AvailableNegative4422740 - 442314715540.7
cupin domain-containing proteinDXT99_18465Not AvailablePositive4423368 - 442388018711.8
membrane dipeptidaseDXT99_18470Not AvailableNegative4424082 - 442527844117.8
cpbp family intramembrane metalloproteaseDXT99_18475Not AvailableNegative4425524 - 442618324620.6
ydcf family proteinDXT99_18480Not AvailableNegative4426195 - 442699529869.7
duf3267 domain-containing proteinDXT99_18485Not AvailableNegative4427023 - 442762222048.9
had family hydrolaseDXT99_18490Not AvailableNegative4427656 - 442828523913.9
duf72 domain-containing proteinDXT99_18495Not AvailableNegative4428534 - 442928329128.7

Displaying genes 3661 – 3670 of 5291 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.