Pontibacter diazotrophicus strain H4X

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter diazotrophicus strain H4X is a Gram-negative bacterium characterized by its rod shape. This organism possesses a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number QRGR00000000.1, providing a reference point for genomic studies and comparisons with related microbial species. As a member of the genus Pontibacter, this strain is likely involved in the nitrogen cycle, particularly in environments where nitrogen fixation is crucial. The ability to fix nitrogen can contribute significantly to soil fertility and ecosystem health, particularly in arid or nutrient-poor environments where this bacterium may thrive. The traits of Pontibacter diazotrophicus strain H4X underscore its potential ecological role. By fixing atmospheric nitrogen, it can enhance soil nutrient availability, supporting plant growth and influencing microbial community dynamics. Understanding the functional capabilities of such microorganisms is essential for exploring their applications in sustainable agriculture and ecosystem management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter diazotrophicus
Strainstrain H4X

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pontibacter diazotrophicus strain H4X Scaffold84_1, whole genome

Gene Summary

Adenine Count

1664667 bp

Thymine Count

1665393 bp

Guanine Count

1536605 bp

Cytosine Count

1530224 bp

Genome Length

6396889 bp

Protein-coding Genes

5241 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
excinuclease abc subunit uvraDXT99_17635Not AvailableNegative4231319 - 4234234108115.0
duf202 domain-containing proteinDXT99_17640Not AvailableNegative4234394 - 423479214954.3
alpha-amylaseDXT99_17645Not AvailableNegative4234988 - 423636151560.0
tetr/acrr family transcriptional regulatorDXT99_17650Not AvailableNegative4236434 - 423700321383.5
tigr00730 family rossman fold proteinDXT99_17655Not AvailableNegative4237144 - 423800732120.5
abc transporter permeaseDXT99_17660Not AvailableNegative4238134 - 423938445931.4
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaDXT99_17665Not AvailablePositive4239576 - 424062239762.7
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseDXT99_17670Not AvailablePositive4240771 - 424144824871.8
abc transporter atp-binding proteinDXT99_17675Not AvailableNegative4241587 - 424231227041.8
duf2795 domain-containing proteinDXT99_17680Not AvailableNegative4242411 - 42426328655.83

Displaying genes 3501 – 3510 of 5291 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.