Pontibacter diazotrophicus strain H4X

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter diazotrophicus strain H4X is a Gram-negative bacterium characterized by its rod shape. This organism possesses a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number QRGR00000000.1, providing a reference point for genomic studies and comparisons with related microbial species. As a member of the genus Pontibacter, this strain is likely involved in the nitrogen cycle, particularly in environments where nitrogen fixation is crucial. The ability to fix nitrogen can contribute significantly to soil fertility and ecosystem health, particularly in arid or nutrient-poor environments where this bacterium may thrive. The traits of Pontibacter diazotrophicus strain H4X underscore its potential ecological role. By fixing atmospheric nitrogen, it can enhance soil nutrient availability, supporting plant growth and influencing microbial community dynamics. Understanding the functional capabilities of such microorganisms is essential for exploring their applications in sustainable agriculture and ecosystem management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter diazotrophicus
Strainstrain H4X

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pontibacter diazotrophicus strain H4X Scaffold84_1, whole genome

Gene Summary

Adenine Count

1664667 bp

Thymine Count

1665393 bp

Guanine Count

1536605 bp

Cytosine Count

1530224 bp

Genome Length

6396889 bp

Protein-coding Genes

5241 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospholipaseDXT99_11480Not AvailableNegative2787389 - 278801822846.2
ring-cleaving dioxygenaseDXT99_11485Not AvailableNegative2788102 - 278903734939.3
pirin family proteinDXT99_11490Not AvailableNegative2789048 - 278976127306.4
polyisoprenoid-binding proteinDXT99_11495Not AvailableNegative2789897 - 279043319698.8
ring-cleaving dioxygenaseDXT99_11500Not AvailableNegative2790661 - 279159935656.1
arsr family transcriptional regulatorDXT99_11505Not AvailablePositive2792043 - 279237512133.8
methyltransferase domain-containing proteinDXT99_11510Not AvailablePositive2792424 - 279326930065.7
arsenical-resistance proteinDXT99_11515Not AvailablePositive2793479 - 279456739636.7
metallophosphoesteraseDXT99_11520Not AvailablePositive2794644 - 279541729290.7
hypothetical proteinDXT99_11525Not AvailablePositive2795820 - 279670734516.4

Displaying genes 2281 – 2290 of 5291 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.