Pontibacter diazotrophicus strain H4X

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter diazotrophicus strain H4X is a Gram-negative bacterium characterized by its rod shape. This organism possesses a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number QRGR00000000.1, providing a reference point for genomic studies and comparisons with related microbial species. As a member of the genus Pontibacter, this strain is likely involved in the nitrogen cycle, particularly in environments where nitrogen fixation is crucial. The ability to fix nitrogen can contribute significantly to soil fertility and ecosystem health, particularly in arid or nutrient-poor environments where this bacterium may thrive. The traits of Pontibacter diazotrophicus strain H4X underscore its potential ecological role. By fixing atmospheric nitrogen, it can enhance soil nutrient availability, supporting plant growth and influencing microbial community dynamics. Understanding the functional capabilities of such microorganisms is essential for exploring their applications in sustainable agriculture and ecosystem management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter diazotrophicus
Strainstrain H4X

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pontibacter diazotrophicus strain H4X Scaffold84_1, whole genome

Gene Summary

Adenine Count

1664667 bp

Thymine Count

1665393 bp

Guanine Count

1536605 bp

Cytosine Count

1530224 bp

Genome Length

6396889 bp

Protein-coding Genes

5241 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5-dehydro-4-deoxy-d-glucuronate isomeraseDXT99_09665Not AvailablePositive2336529 - 233736831492.4
gluconate 5-dehydrogenaseDXT99_09670Not AvailablePositive2337374 - 233815928226.1
laci family transcriptional regulatorDXT99_09675Not AvailablePositive2338197 - 233922838406.3
tagaturonate reductaseDXT99_09680Not AvailablePositive2339356 - 234078953901.4
glucuronate isomeraseDXT99_09685Not AvailablePositive2340838 - 234223854027.9
sugar kinaseDXT99_09690Not AvailablePositive2342240 - 234325336672.6
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolaseDXT99_09695Not AvailablePositive2343289 - 234396324352.7
trap transporter substrate-binding proteinDXT99_09700Not AvailablePositive2343963 - 234501539646.4
trap transporter small permeaseDXT99_09705Not AvailablePositive2345036 - 234553018471.3
trap transporter large permeaseDXT99_09710Not AvailablePositive2345610 - 234690845391.4

Displaying genes 1921 – 1930 of 5291 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.