Pontibacter diazotrophicus strain H4X

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter diazotrophicus strain H4X is a Gram-negative bacterium characterized by its rod shape. This organism possesses a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number QRGR00000000.1, providing a reference point for genomic studies and comparisons with related microbial species. As a member of the genus Pontibacter, this strain is likely involved in the nitrogen cycle, particularly in environments where nitrogen fixation is crucial. The ability to fix nitrogen can contribute significantly to soil fertility and ecosystem health, particularly in arid or nutrient-poor environments where this bacterium may thrive. The traits of Pontibacter diazotrophicus strain H4X underscore its potential ecological role. By fixing atmospheric nitrogen, it can enhance soil nutrient availability, supporting plant growth and influencing microbial community dynamics. Understanding the functional capabilities of such microorganisms is essential for exploring their applications in sustainable agriculture and ecosystem management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter diazotrophicus
Strainstrain H4X

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pontibacter diazotrophicus strain H4X Scaffold84_1, whole genome

Gene Summary

Adenine Count

1664667 bp

Thymine Count

1665393 bp

Guanine Count

1536605 bp

Cytosine Count

1530224 bp

Genome Length

6396889 bp

Protein-coding Genes

5241 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycoside hydrolase family 88 proteinDXT99_09615Not AvailableNegative2317626 - 231886447574.1
ragb/susd family nutrient uptake outer membrane proteinDXT99_09620Not AvailableNegative2318969 - 232066663447.5
tonb-dependent receptorDXT99_09625Not AvailableNegative2320691 - 2323693110162.0
pectin esteraseDXT99_09630Not AvailableNegative2323948 - 232489235102.4
pectate lyaseDXT99_09635Not AvailableNegative2324889 - 232631051308.3
duf4861 domain-containing proteinDXT99_09640Not AvailableNegative2326352 - 232763547919.9
pectate lyaseDXT99_09645Not AvailableNegative2327770 - 232926353727.4
duf5123 domain-containing proteinDXT99_09650Not AvailableNegative2329330 - 233092558255.7
ragb/susd family nutrient uptake outer membrane proteinDXT99_09655Not AvailableNegative2330963 - 233277467436.0
tonb-dependent receptorDXT99_09660Not AvailableNegative2332793 - 2336041120013.0

Displaying genes 1911 – 1920 of 5291 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.