Paenibacillus sp. VMFN-D1

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. VMFN-D1 is characterized by a single replicon, indicating a streamlined genomic organization. This feature can contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number QRDU00000000.1, which allows for its genomic information to be accessed for further research and analysis. Paenibacillus species are known for their ecological roles, particularly in soil and plant interactions. They often contribute to nutrient cycling and can promote plant growth through various mechanisms, including the production of plant growth-promoting substances and the degradation of organic matter. The presence of a single replicon in Paenibacillus sp. VMFN-D1 may reflect its specialization in these ecological niches, allowing it to efficiently utilize available resources. Understanding the genomic and ecological attributes of Paenibacillus sp. VMFN-D1 may provide insights into its potential applications in agriculture and biotechnology, particularly in sustainable practices that enhance soil health and plant productivity. The study of such strains is crucial as they can serve as biocontrol agents or biofertilizers, contributing to environmentally friendly farming practices.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. VMFN-D1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. VMFN-D1 Ga0213530_116, whole genome shotgun

Gene Summary

Adenine Count

1697945 bp

Thymine Count

1669118 bp

Guanine Count

1959890 bp

Cytosine Count

1883656 bp

Genome Length

7211395 bp

Protein-coding Genes

6468 genes

Non-Coding Genes

127 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
large subunit ribosomal protein l3C7820_6543Not AvailablePositive7036851 - 703747422497.5
large subunit ribosomal protein l4C7820_6544Not AvailablePositive7037501 - 703812422545.7
large subunit ribosomal protein l23C7820_6545Not AvailablePositive7038124 - 703841711322.7
lsu ribosomal protein l2pC7820_6546Not AvailablePositive7038430 - 703926030328.8
ssu ribosomal protein s19pC7820_6547Not AvailablePositive7039331 - 703960910659.9
lsu ribosomal protein l22pC7820_6548Not AvailablePositive7039645 - 703997712251.2
ssu ribosomal protein s3pC7820_6549Not AvailablePositive7039991 - 704065624199.3
lsu ribosomal protein l16pC7820_6550Not AvailablePositive7040659 - 704109316235.2
lsu ribosomal protein l29pC7820_6551Not AvailablePositive7041083 - 70412807528.13
ssu ribosomal protein s17pC7820_6552Not AvailablePositive7041325 - 704159110355.7

Displaying genes 6421 – 6430 of 6595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.