Paenibacillus sp. VMFN-D1

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. VMFN-D1 is characterized by a single replicon, indicating a streamlined genomic organization. This feature can contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number QRDU00000000.1, which allows for its genomic information to be accessed for further research and analysis. Paenibacillus species are known for their ecological roles, particularly in soil and plant interactions. They often contribute to nutrient cycling and can promote plant growth through various mechanisms, including the production of plant growth-promoting substances and the degradation of organic matter. The presence of a single replicon in Paenibacillus sp. VMFN-D1 may reflect its specialization in these ecological niches, allowing it to efficiently utilize available resources. Understanding the genomic and ecological attributes of Paenibacillus sp. VMFN-D1 may provide insights into its potential applications in agriculture and biotechnology, particularly in sustainable practices that enhance soil health and plant productivity. The study of such strains is crucial as they can serve as biocontrol agents or biofertilizers, contributing to environmentally friendly farming practices.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. VMFN-D1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. VMFN-D1 Ga0213530_116, whole genome shotgun

Gene Summary

Adenine Count

1697945 bp

Thymine Count

1669118 bp

Guanine Count

1959890 bp

Cytosine Count

1883656 bp

Genome Length

7211395 bp

Protein-coding Genes

6468 genes

Non-Coding Genes

127 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lsu ribosomal protein l12pC7820_6531Not AvailablePositive7022541 - 702290612543.1
16s rrna (guanine1207-n2)-methyltransferaseC7820_6532Not AvailablePositive7023043 - 702364822076.4
dna-directed rna polymerase subunit betaC7820_6533Not AvailablePositive7024006 - 7027551132088.0
dna-directed rna polymerase subunit beta'C7820_6534Not AvailablePositive7027635 - 7031249135190.0
large subunit ribosomal protein l7aC7820_6535Not AvailablePositive7031409 - 70316608820.82
small subunit ribosomal protein s12C7820_6536Not AvailablePositive7031805 - 703222715560.2
ssu ribosomal protein s7pC7820_6537Not AvailablePositive7032272 - 703274217824.6
translation elongation factor 2 (ef-2/ef-g)C7820_6538Not AvailablePositive7032791 - 703487276588.5
hypothetical proteinC7820_6539Not AvailableNegative7034806 - 703608348491.3
ssu ribosomal protein s10pC7820_6542Not AvailablePositive7036506 - 703681411642.3

Displaying genes 6411 – 6420 of 6595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.