Paenibacillus sp. VMFN-D1

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. VMFN-D1 is characterized by a single replicon, indicating a streamlined genomic organization. This feature can contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number QRDU00000000.1, which allows for its genomic information to be accessed for further research and analysis. Paenibacillus species are known for their ecological roles, particularly in soil and plant interactions. They often contribute to nutrient cycling and can promote plant growth through various mechanisms, including the production of plant growth-promoting substances and the degradation of organic matter. The presence of a single replicon in Paenibacillus sp. VMFN-D1 may reflect its specialization in these ecological niches, allowing it to efficiently utilize available resources. Understanding the genomic and ecological attributes of Paenibacillus sp. VMFN-D1 may provide insights into its potential applications in agriculture and biotechnology, particularly in sustainable practices that enhance soil health and plant productivity. The study of such strains is crucial as they can serve as biocontrol agents or biofertilizers, contributing to environmentally friendly farming practices.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. VMFN-D1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. VMFN-D1 Ga0213530_116, whole genome shotgun

Gene Summary

Adenine Count

1697945 bp

Thymine Count

1669118 bp

Guanine Count

1959890 bp

Cytosine Count

1883656 bp

Genome Length

7211395 bp

Protein-coding Genes

6468 genes

Non-Coding Genes

127 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fe-s cluster assembly protein sufdC7820_3695Not AvailablePositive3910344 - 391164846708.4
l-selenocysteine selenide-lyase (l-alanine-forming)C7820_3696Not AvailablePositive3911645 - 391285644390.1
nitrogen fixation nifu-like proteinC7820_3697Not AvailablePositive3912853 - 391328716272.3
fe-s cluster assembly protein sufbC7820_3698Not AvailablePositive3913309 - 391470652400.5
putative nucleotidyltransferase with hdig domainC7820_3699Not AvailableNegative3914936 - 391598539088.5
molybdopterin synthase catalytic subunitC7820_3700Not AvailableNegative3916075 - 391680326270.0
2',3'-cyclic-nucleotide 2'-phosphodiesterase (5'-nucleotidase family)C7820_3701Not AvailablePositive3916931 - 391837052725.3
undecaprenyl-diphosphataseC7820_3702Not AvailablePositive3918392 - 391921930550.5
hd-gyp domain-containing protein (c-di-gmp phosphodiesterase class ii)C7820_3703Not AvailablePositive3919351 - 392043640435.2
radical sam/cxcxxxxc motif protein yfkabC7820_3704Not AvailablePositive3920734 - 392186742809.5

Displaying genes 3681 – 3690 of 6595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.