Paenibacillus sp. VMFN-D1

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. VMFN-D1 is characterized by a single replicon, indicating a streamlined genomic organization. This feature can contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number QRDU00000000.1, which allows for its genomic information to be accessed for further research and analysis. Paenibacillus species are known for their ecological roles, particularly in soil and plant interactions. They often contribute to nutrient cycling and can promote plant growth through various mechanisms, including the production of plant growth-promoting substances and the degradation of organic matter. The presence of a single replicon in Paenibacillus sp. VMFN-D1 may reflect its specialization in these ecological niches, allowing it to efficiently utilize available resources. Understanding the genomic and ecological attributes of Paenibacillus sp. VMFN-D1 may provide insights into its potential applications in agriculture and biotechnology, particularly in sustainable practices that enhance soil health and plant productivity. The study of such strains is crucial as they can serve as biocontrol agents or biofertilizers, contributing to environmentally friendly farming practices.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. VMFN-D1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. VMFN-D1 Ga0213530_116, whole genome shotgun

Gene Summary

Adenine Count

1697945 bp

Thymine Count

1669118 bp

Guanine Count

1959890 bp

Cytosine Count

1883656 bp

Genome Length

7211395 bp

Protein-coding Genes

6468 genes

Non-Coding Genes

127 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding marr family transcriptional regulatorC7820_2070Not AvailableNegative2244682 - 224510115799.3
phosphoglycerol transferase mdob-like alkp superfamily enzymeC7820_2071Not AvailableNegative2245241 - 224704967139.7
nucleoside-diphosphate-sugar epimeraseC7820_2073Not AvailableNegative2248356 - 224927032320.3
arac family transcriptional regulatorC7820_2074Not AvailableNegative2249483 - 225044235903.5
nadph2 dehydrogenaseC7820_2075Not AvailableNegative2250515 - 225152536590.6
dna-binding lrp family transcriptional regulatorC7820_2076Not AvailablePositive2251747 - 225218116031.5
hypothetical proteinC7820_2077Not AvailablePositive2252253 - 225262414158.6
adp-ribose pyrophosphatase yjhb (nudix family)C7820_2078Not AvailableNegative2252621 - 225310317908.4
sugar phosphate isomerase/epimeraseC7820_2079Not AvailableNegative2253191 - 225406332630.8
alpha-l-fucosidaseC7820_2080Not AvailableNegative2254088 - 225537149145.8

Displaying genes 2121 – 2130 of 6595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.