Paenibacillus sp. VMFN-D1

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus sp. VMFN-D1 is characterized by a single replicon, indicating a streamlined genomic organization. This feature can contribute to its adaptability and efficiency in various environments. The strain is cataloged under the accession number QRDU00000000.1, which allows for its genomic information to be accessed for further research and analysis. Paenibacillus species are known for their ecological roles, particularly in soil and plant interactions. They often contribute to nutrient cycling and can promote plant growth through various mechanisms, including the production of plant growth-promoting substances and the degradation of organic matter. The presence of a single replicon in Paenibacillus sp. VMFN-D1 may reflect its specialization in these ecological niches, allowing it to efficiently utilize available resources. Understanding the genomic and ecological attributes of Paenibacillus sp. VMFN-D1 may provide insights into its potential applications in agriculture and biotechnology, particularly in sustainable practices that enhance soil health and plant productivity. The study of such strains is crucial as they can serve as biocontrol agents or biofertilizers, contributing to environmentally friendly farming practices.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. VMFN-D1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus sp. VMFN-D1 Ga0213530_116, whole genome shotgun

Gene Summary

Adenine Count

1697945 bp

Thymine Count

1669118 bp

Guanine Count

1959890 bp

Cytosine Count

1883656 bp

Genome Length

7211395 bp

Protein-coding Genes

6468 genes

Non-Coding Genes

127 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative membrane protein ypha (doxx/surf4 family)C7820_1331Not AvailablePositive1407919 - 140834115467.3
putative transcriptional regulator ydeeC7820_1332Not AvailablePositive1408537 - 140901617759.9
penicillin-binding protein 2bC7820_1333Not AvailableNegative1409188 - 141146782690.0
broad specificity phosphatase phoeC7820_1334Not AvailablePositive1411799 - 141237421672.1
ubiquinone/menaquinone biosynthesis c-methylase ubieC7820_1335Not AvailablePositive1412485 - 141331230892.2
hypothetical proteinC7820_1336Not AvailablePositive1413436 - 141372910962.1
cubico group peptidase (beta-lactamase class c family)C7820_1338Not AvailablePositive1413928 - 141504641429.4
dna-binding xre family transcriptional regulatorC7820_1339Not AvailablePositive1415350 - 141644740466.4
hypothetical proteinC7820_1340Not AvailableNegative1416758 - 141708412455.8
dna-binding transcriptional arsr family regulatorC7820_1341Not AvailablePositive1417435 - 141776112127.8

Displaying genes 1401 – 1410 of 6595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.