Halorubrum sp. Atlit-9R

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum sp. Atlit-9R is a rod-shaped archaeon that possesses flagella, which suggests it has the capability for motility. This organism is characterized by a single replicon, indicating a streamlined genomic structure. The genomic sequence for Halorubrum sp. Atlit-9R is available under the accession number QPLU00000000.1, providing a reference for further genetic and functional studies. The presence of flagella in Halorubrum sp. Atlit-9R may offer advantages in its ecological niche, potentially facilitating movement towards optimal environments or resources. This motility can be crucial for survival in varying salinity levels often found in hypersaline habitats, where many members of the Halorubrum genus thrive. The rod shape might also contribute to its adaptability in such challenging conditions by enhancing surface area-to-volume ratios, which can be beneficial for nutrient uptake and interaction with the environment. In summary, Halorubrum sp. Atlit-9R's rod shape, motility through flagella, and simple genomic configuration reflect its adaptation to specialized ecological niches, particularly in hypersaline environments. Understanding these traits can provide insights into the evolutionary strategies employed by extremophiles in harsh habitats.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum sp. Atlit-9R
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum sp. Atlit-9R P_contig000263, whole genome shotgun

Gene Summary

Adenine Count

608579 bp

Thymine Count

601584 bp

Guanine Count

1354770 bp

Cytosine Count

1344417 bp

Genome Length

3909350 bp

Protein-coding Genes

3848 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh-quinone oxidoreductase subunit dDVK08_03115Not AvailableNegative620448 - 62211263182.5
nadh-quinone oxidoreductase subunit bDVK08_03120Not AvailableNegative622109 - 62280725933.0
nadh-quinone oxidoreductase subunit aDVK08_03125Not AvailableNegative622807 - 62322315060.6
5-(carboxyamino)imidazole ribonucleotide mutaseDVK08_03130Not AvailableNegative623424 - 62403221399.7
nudix hydrolaseDVK08_03135Not AvailableNegative624109 - 62453415081.4
type ii toxin-antitoxin system hicb family antitoxinDVK08_03140Not AvailablePositive624689 - 6249589777.88
type ii toxin-antitoxin system hica family toxinDVK08_03145Not AvailablePositive624960 - 6252119603.1
5-(carboxyamino)imidazole ribonucleotide synthaseDVK08_03150Not AvailableNegative625230 - 62639941513.5
hypothetical proteinDVK08_03160Not AvailableNegative626727 - 62746126410.3
cell division protein ftszDVK08_03165Not AvailableNegative627540 - 62872740142.3

Displaying genes 631 – 640 of 3915 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.