Halorubrum sp. Atlit-9R

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum sp. Atlit-9R is a rod-shaped archaeon that possesses flagella, which suggests it has the capability for motility. This organism is characterized by a single replicon, indicating a streamlined genomic structure. The genomic sequence for Halorubrum sp. Atlit-9R is available under the accession number QPLU00000000.1, providing a reference for further genetic and functional studies. The presence of flagella in Halorubrum sp. Atlit-9R may offer advantages in its ecological niche, potentially facilitating movement towards optimal environments or resources. This motility can be crucial for survival in varying salinity levels often found in hypersaline habitats, where many members of the Halorubrum genus thrive. The rod shape might also contribute to its adaptability in such challenging conditions by enhancing surface area-to-volume ratios, which can be beneficial for nutrient uptake and interaction with the environment. In summary, Halorubrum sp. Atlit-9R's rod shape, motility through flagella, and simple genomic configuration reflect its adaptation to specialized ecological niches, particularly in hypersaline environments. Understanding these traits can provide insights into the evolutionary strategies employed by extremophiles in harsh habitats.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum sp. Atlit-9R
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum sp. Atlit-9R P_contig000263, whole genome shotgun

Gene Summary

Adenine Count

608579 bp

Thymine Count

601584 bp

Guanine Count

1354770 bp

Cytosine Count

1344417 bp

Genome Length

3909350 bp

Protein-coding Genes

3848 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
riboflavin synthaseDVK08_19785Not AvailablePositive3892807 - 38929715968.11
prsw family intramembrane metalloproteaseDVK08_19790Not AvailableNegative3893022 - 38932477767.13
gntr family transcriptional regulatorDVK08_19795Not AvailablePositive3893248 - 389368816491.8
s1 rna-binding domain-containing proteinDVK08_19800Not AvailablePositive3893689 - 389409014747.6
nad(p)-dependent oxidoreductaseDVK08_19810Not AvailablePositive3894570 - 38947104785.72
nad(p)-dependent oxidoreductaseDVK08_19815Not AvailablePositive3894720 - 389500910612.0
glycoside hydrolase family 2DVK08_19820Not AvailablePositive3895010 - 389544816427.0
copper homeostasis protein cutcDVK08_19825Not AvailablePositive3895449 - 389587115451.9
coa-binding proteinDVK08_19830Not AvailableNegative3895888 - 389629715048.4
outer membrane lipoprotein carrier protein lolaDVK08_19835Not AvailableNegative3896326 - 389669113521.4

Displaying genes 3881 – 3890 of 3915 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.