Halorubrum sp. Atlit-9R

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum sp. Atlit-9R is a rod-shaped archaeon that possesses flagella, which suggests it has the capability for motility. This organism is characterized by a single replicon, indicating a streamlined genomic structure. The genomic sequence for Halorubrum sp. Atlit-9R is available under the accession number QPLU00000000.1, providing a reference for further genetic and functional studies. The presence of flagella in Halorubrum sp. Atlit-9R may offer advantages in its ecological niche, potentially facilitating movement towards optimal environments or resources. This motility can be crucial for survival in varying salinity levels often found in hypersaline habitats, where many members of the Halorubrum genus thrive. The rod shape might also contribute to its adaptability in such challenging conditions by enhancing surface area-to-volume ratios, which can be beneficial for nutrient uptake and interaction with the environment. In summary, Halorubrum sp. Atlit-9R's rod shape, motility through flagella, and simple genomic configuration reflect its adaptation to specialized ecological niches, particularly in hypersaline environments. Understanding these traits can provide insights into the evolutionary strategies employed by extremophiles in harsh habitats.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum sp. Atlit-9R
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum sp. Atlit-9R P_contig000263, whole genome shotgun

Gene Summary

Adenine Count

608579 bp

Thymine Count

601584 bp

Guanine Count

1354770 bp

Cytosine Count

1344417 bp

Genome Length

3909350 bp

Protein-coding Genes

3848 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
electron transfer flavoprotein subunit alpha/fixb family proteinDVK08_19675Not AvailableNegative3882566 - 388295613102.6
crispr-associated endonuclease cas1DVK08_19685Not AvailablePositive3883466 - 388391416933.1
gtpaseDVK08_19690Not AvailableNegative3883915 - 388436216370.9
hypothetical proteinDVK08_19695Not AvailableNegative3884363 - 388474614036.4
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeDVK08_19700Not AvailableNegative3884811 - 388525715906.6
Trna-ileNot AvailableNot AvailablePositive3885315 - 3885390Not Available
response regulatorDVK08_19710Not AvailableNegative3885496 - 38856365412.54
sugar fermentation stimulation protein sfsaDVK08_19715Not AvailablePositive3885705 - 388612415725.5
cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseDVK08_19720Not AvailablePositive3886152 - 388659816639.7
secretion system proteinDVK08_19725Not AvailableNegative3886599 - 388704416284.2

Displaying genes 3861 – 3870 of 3915 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.