Runella aurantiaca strain YX9

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Runella

Description

Runella aurantiaca strain YX9 is a Gram-negative bacterium characterized by its bacilli shape. This strain possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The accessions associated with this strain include QPIW00000000.1, which provides a reference for its genetic characterization. The Gram-negative nature of Runella aurantiaca strain YX9 suggests that it has a distinctive cell wall structure, typically characterized by a thin peptidoglycan layer surrounded by an outer membrane. This structure can influence its interactions with other microorganisms and its resistance to certain antibiotics. Runella species, including strain YX9, are often associated with nutrient cycling in their environments, particularly in marine ecosystems. Their metabolic capabilities may play a crucial role in the degradation of organic materials, contributing to the ecological balance within their habitats. Understanding the specific traits of Runella aurantiaca strain YX9, such as its Gram-negative classification and bacilli morphology, is essential for further studies on its ecological functions and potential applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella aurantiaca
Strainstrain YX9

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Runella aurantiaca strain YX9 Contig67, whole genome shotgun

Gene Summary

Adenine Count

1981224 bp

Thymine Count

2000232 bp

Guanine Count

1623539 bp

Cytosine Count

1606816 bp

Genome Length

7211915 bp

Protein-coding Genes

5859 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinDVG78_04285Not AvailableNegative991001 - 99247955125.7
susc/raga family tonb-linked outer membrane proteinDVG78_04290Not AvailableNegative992495 - 995962127313.0
fecr family proteinDVG78_04295Not AvailableNegative996125 - 99713537902.5
rna polymerase sigma-70 factorDVG78_04300Not AvailableNegative997168 - 99772522017.2
alpha-l-rhamnosidaseDVG78_04305Not AvailableNegative997923 - 1000766106478.0
acyl-coa desaturaseDVG78_04310Not AvailableNegative1000959 - 100207142380.1
hypothetical proteinDVG78_04315Not AvailablePositive1002805 - 10030629787.56
glucosamine-6-phosphate deaminaseDVG78_04320Not AvailableNegative1003278 - 100402727289.7
gfo/idh/moca family oxidoreductaseDVG78_04325Not AvailableNegative1004068 - 100551053999.7
dna mismatch repair protein mutsDVG78_04330Not AvailablePositive1005666 - 1008386102693.0

Displaying genes 851 – 860 of 5903 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.