Runella aurantiaca strain YX9

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Runella

Description

Runella aurantiaca strain YX9 is a Gram-negative bacterium characterized by its bacilli shape. This strain possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The accessions associated with this strain include QPIW00000000.1, which provides a reference for its genetic characterization. The Gram-negative nature of Runella aurantiaca strain YX9 suggests that it has a distinctive cell wall structure, typically characterized by a thin peptidoglycan layer surrounded by an outer membrane. This structure can influence its interactions with other microorganisms and its resistance to certain antibiotics. Runella species, including strain YX9, are often associated with nutrient cycling in their environments, particularly in marine ecosystems. Their metabolic capabilities may play a crucial role in the degradation of organic materials, contributing to the ecological balance within their habitats. Understanding the specific traits of Runella aurantiaca strain YX9, such as its Gram-negative classification and bacilli morphology, is essential for further studies on its ecological functions and potential applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella aurantiaca
Strainstrain YX9

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Runella aurantiaca strain YX9 Contig67, whole genome shotgun

Gene Summary

Adenine Count

1981224 bp

Thymine Count

2000232 bp

Guanine Count

1623539 bp

Cytosine Count

1606816 bp

Genome Length

7211915 bp

Protein-coding Genes

5859 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDVG78_03130Not AvailableNegative736121 - 73670222650.3
cupin domain-containing proteinDVG78_03135Not AvailableNegative736739 - 73729321028.4
is982 family transposaseDVG78_03140Not AvailablePositive737426 - 73781114503.8
n-acetylmuramoyl-l-alanine amidaseDVG78_03145Not AvailableNegative737839 - 73903845668.0
laci family transcriptional regulatorDVG78_03150Not AvailableNegative739049 - 74008038965.8
sdr family nad(p)-dependent oxidoreductaseDVG78_03155Not AvailablePositive740360 - 74113627618.1
5-dehydro-4-deoxy-d-glucuronate isomeraseDVG78_03160Not AvailablePositive741184 - 74201431131.0
tonb-dependent receptorDVG78_03165Not AvailablePositive742043 - 745234116864.0
ragb/susd family nutrient uptake outer membrane proteinDVG78_03170Not AvailablePositive745302 - 74708967129.0
pectate lyaseDVG78_03175Not AvailablePositive747150 - 74822339874.7

Displaying genes 621 – 630 of 5903 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.