Runella aurantiaca strain YX9

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Runella

Description

Runella aurantiaca strain YX9 is a Gram-negative bacterium characterized by its bacilli shape. This strain possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The accessions associated with this strain include QPIW00000000.1, which provides a reference for its genetic characterization. The Gram-negative nature of Runella aurantiaca strain YX9 suggests that it has a distinctive cell wall structure, typically characterized by a thin peptidoglycan layer surrounded by an outer membrane. This structure can influence its interactions with other microorganisms and its resistance to certain antibiotics. Runella species, including strain YX9, are often associated with nutrient cycling in their environments, particularly in marine ecosystems. Their metabolic capabilities may play a crucial role in the degradation of organic materials, contributing to the ecological balance within their habitats. Understanding the specific traits of Runella aurantiaca strain YX9, such as its Gram-negative classification and bacilli morphology, is essential for further studies on its ecological functions and potential applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella aurantiaca
Strainstrain YX9

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Runella aurantiaca strain YX9 Contig67, whole genome shotgun

Gene Summary

Adenine Count

1981224 bp

Thymine Count

2000232 bp

Guanine Count

1623539 bp

Cytosine Count

1606816 bp

Genome Length

7211915 bp

Protein-coding Genes

5859 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uma2 family endonucleaseDVG78_28890Not AvailableNegative6989788 - 699024317073.6
hd domain-containing proteinDVG78_28895Not AvailableNegative6990316 - 699090322307.5
plp-dependent aminotransferase family proteinDVG78_28900Not AvailableNegative6990967 - 699244555521.1
amidohydrolaseDVG78_28905Not AvailableNegative6992455 - 699388851580.7
pyridoxamine 5'-phosphate oxidase family proteinDVG78_28910Not AvailablePositive6994004 - 699463923757.5
dinb family proteinDVG78_28915Not AvailablePositive6994668 - 699518920016.1
cupin domain-containing proteinDVG78_28920Not AvailablePositive6995225 - 699555112411.6
yggs family pyridoxal phosphate-dependent enzymeDVG78_28925Not AvailableNegative6995651 - 699630124579.7
acylaseDVG78_28930Not AvailablePositive6996564 - 699868178807.9
sulfataseDVG78_28935Not AvailableNegative6998694 - 700007351278.1

Displaying genes 5721 – 5730 of 5903 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.