Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Runella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Runella |
| Species | Runella aurantiaca |
| Strain | strain YX9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1981224 bp
Thymine Count
2000232 bp
Guanine Count
1623539 bp
Cytosine Count
1606816 bp
Genome Length
7211915 bp
Protein-coding Genes
5859 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | DVG78_28535 | Not Available | Negative | 6894297 - 6895172 | 33667.5 |
| protocatechuate 3,4-dioxygenase subunit beta | DVG78_28540 | Not Available | Positive | 6895427 - 6896134 | 26561.6 |
| protocatechuate 3,4-dioxygenase subunit alpha | DVG78_28545 | Not Available | Positive | 6896151 - 6896675 | 19726.2 |
| 3-carboxy-cis,cis-muconate cycloisomerase | DVG78_28550 | Not Available | Positive | 6896687 - 6898000 | 48130.5 |
| 3-oxoadipate enol-lactonase | DVG78_28555 | Not Available | Positive | 6898002 - 6899141 | 42466.8 |
| 4-hydroxybenzoate 3-monooxygenase | DVG78_28560 | Not Available | Positive | 6899144 - 6900343 | 45193.7 |
| 3-oxoacid coa-transferase subunit b | DVG78_28565 | Not Available | Positive | 6900396 - 6901742 | 46665.5 |
| 3-oxoadipyl-coa thiolase | DVG78_28570 | Not Available | Positive | 6901772 - 6902980 | 43107.9 |
| transcriptional regulator | DVG78_28575 | Not Available | Negative | 6903019 - 6903399 | 14685.1 |
| sdr family nad(p)-dependent oxidoreductase | DVG78_28580 | Not Available | Positive | 6903493 - 6904395 | 32477.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
