Runella aurantiaca strain YX9

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Runella

Description

Runella aurantiaca strain YX9 is a Gram-negative bacterium characterized by its bacilli shape. This strain possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The accessions associated with this strain include QPIW00000000.1, which provides a reference for its genetic characterization. The Gram-negative nature of Runella aurantiaca strain YX9 suggests that it has a distinctive cell wall structure, typically characterized by a thin peptidoglycan layer surrounded by an outer membrane. This structure can influence its interactions with other microorganisms and its resistance to certain antibiotics. Runella species, including strain YX9, are often associated with nutrient cycling in their environments, particularly in marine ecosystems. Their metabolic capabilities may play a crucial role in the degradation of organic materials, contributing to the ecological balance within their habitats. Understanding the specific traits of Runella aurantiaca strain YX9, such as its Gram-negative classification and bacilli morphology, is essential for further studies on its ecological functions and potential applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella aurantiaca
Strainstrain YX9

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Runella aurantiaca strain YX9 Contig67, whole genome shotgun

Gene Summary

Adenine Count

1981224 bp

Thymine Count

2000232 bp

Guanine Count

1623539 bp

Cytosine Count

1606816 bp

Genome Length

7211915 bp

Protein-coding Genes

5859 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serpin family proteinDVG78_20450Not AvailablePositive4953467 - 495472046157.4
fad-dependent oxidoreductaseDVG78_20455Not AvailableNegative4954789 - 495681974950.6
port family proteinDVG78_20460Not AvailablePositive4956966 - 495764924970.8
m1 family peptidaseDVG78_20465Not AvailableNegative4957759 - 496013190147.0
hupe/urej family proteinDVG78_20470Not AvailableNegative4960224 - 496083222236.7
hypoxanthine phosphoribosyltransferaseDVG78_20475Not AvailableNegative4960887 - 496141719917.3
tetratricopeptide repeat proteinDVG78_20480Not AvailablePositive4961514 - 496275248198.2
deor/glpr transcriptional regulatorDVG78_20485Not AvailableNegative4962826 - 496356927025.8
susc/raga family tonb-linked outer membrane proteinDVG78_20490Not AvailablePositive4963807 - 4966992114278.0
ragb/susd family nutrient uptake outer membrane proteinDVG78_20495Not AvailablePositive4967013 - 496833847193.0

Displaying genes 4051 – 4060 of 5903 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.