Runella aurantiaca strain YX9

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Runella

Description

Runella aurantiaca strain YX9 is a Gram-negative bacterium characterized by its bacilli shape. This strain possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The accessions associated with this strain include QPIW00000000.1, which provides a reference for its genetic characterization. The Gram-negative nature of Runella aurantiaca strain YX9 suggests that it has a distinctive cell wall structure, typically characterized by a thin peptidoglycan layer surrounded by an outer membrane. This structure can influence its interactions with other microorganisms and its resistance to certain antibiotics. Runella species, including strain YX9, are often associated with nutrient cycling in their environments, particularly in marine ecosystems. Their metabolic capabilities may play a crucial role in the degradation of organic materials, contributing to the ecological balance within their habitats. Understanding the specific traits of Runella aurantiaca strain YX9, such as its Gram-negative classification and bacilli morphology, is essential for further studies on its ecological functions and potential applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusRunella
SpeciesRunella aurantiaca
Strainstrain YX9

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Runella aurantiaca strain YX9 Contig67, whole genome shotgun

Gene Summary

Adenine Count

1981224 bp

Thymine Count

2000232 bp

Guanine Count

1623539 bp

Cytosine Count

1606816 bp

Genome Length

7211915 bp

Protein-coding Genes

5859 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiamine diphosphokinaseDVG78_07915Not AvailablePositive1946428 - 194709024695.6
dipeptide epimeraseDVG78_07920Not AvailablePositive1947146 - 194825240397.4
hypothetical proteinDVG78_07925Not AvailablePositive1948249 - 194891425060.1
hypothetical proteinDVG78_07930Not AvailableNegative1948965 - 194953720853.4
succinate--coa ligase subunit alphaDVG78_07935Not AvailablePositive1949819 - 195069430073.7
duf4271 domain-containing proteinDVG78_07940Not AvailablePositive1950789 - 195196445383.0
uroporphyrinogen-iii synthaseDVG78_07945Not AvailablePositive1951996 - 195277830066.3
type ix secretion system membrane protein porp/sprfDVG78_07950Not AvailablePositive1952940 - 195391135607.8
gliding motility proteinDVG78_07955Not AvailablePositive1954172 - 195528141749.9
gliding motility protein gldlDVG78_07960Not AvailablePositive1955390 - 195619328929.5

Displaying genes 1571 – 1580 of 5903 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.