Vibrio casei strain JB196 SAMN07141174.130

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio casei strain JB196 (accession number QPGL00000000.1) is a bacterial strain characterized by a single replicon, indicating a streamlined genomic structure. This trait is significant as it suggests a potentially efficient replication and maintenance of genetic material within the organism, which can be advantageous for its survival and adaptability in various environments. Vibrio species, including V. casei, are known for their aquatic habitats, often found in marine environments and estuaries. They play a crucial role in the ecosystem, participating in nutrient cycling and contributing to the microbial diversity within their habitats. The presence of a single replicon in V. casei strain JB196 may reflect its adaptation to specific ecological niches, potentially allowing it to thrive under certain environmental conditions where resource competition is prevalent. The genomic information associated with this strain, as indicated by its accession number, provides a foundation for further research into its metabolic capabilities and ecological interactions. Understanding the genetic makeup of Vibrio casei strain JB196 may reveal insights into its physiological traits and potential applications in biotechnology or environmental microbiology. Overall, the characteristics of this strain highlight the importance of studying microbial diversity and the ecological roles that specific bacteria play in their environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio casei
Strainstrain JB196 SAMN07141174.130

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio casei strain JB196 SAMN07141174.130
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio casei strain JB196 SAMN07141174.130, whole genome shotgun

Gene Summary

Adenine Count

1183861 bp

Thymine Count

1183544 bp

Guanine Count

816195 bp

Cytosine Count

803690 bp

Genome Length

3987290 bp

Protein-coding Genes

3418 genes

Non-Coding Genes

180 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix domain-containing proteinCIK83_13080Not AvailableNegative2827039 - 282784531069.6
rhamnulose-1-phosphate aldolaseCIK83_13085Not AvailableNegative2828056 - 282890431343.4
l-rhamnose mutarotaseCIK83_13090Not AvailableNegative2828964 - 282927812308.7
l-rhamnose isomeraseCIK83_13095Not AvailableNegative2829418 - 283067747636.2
rhamnulokinaseCIK83_13100Not AvailableNegative2830757 - 283222354078.6
3'-5' exonucleaseCIK83_13105Not AvailableNegative2832365 - 283309027747.0
cbs domain-containing proteinCIK83_13110Not AvailableNegative2833094 - 283495670189.2
dna-binding transcriptional regulator kdgrCIK83_13115Not AvailableNegative2835152 - 283593429548.5
2-deoxy-d-gluconate 3-dehydrogenaseCIK83_13120Not AvailablePositive2836206 - 283696726864.2
cupin domain-containing proteinCIK83_13125Not AvailablePositive2837014 - 283733711994.4

Displaying genes 2571 – 2580 of 3598 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.