Stenotrophomonas sp. ATCM1_4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas sp. ATCM1_4 is a rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility. This species has a single replicon, indicating a streamlined genetic structure that may facilitate efficient replication and stability within its environment. The genetic information for this strain can be accessed through the accession number QPFB00000000.1, which provides a reference for further studies and comparative analyses. Stenotrophomonas species are known for their resilience and adaptability in various environments, often thriving in soil and aquatic habitats. They play a crucial role in biogeochemical cycles and can influence microbial communities through their interactions. Due to their metabolic versatility, members of this genus can utilize a wide range of organic compounds, contributing to nutrient cycling and ecosystem functioning. The ecological significance of Stenotrophomonas sp. ATCM1_4 may extend to its potential applications in biotechnology and agriculture, particularly in bioremediation or as plant growth-promoting rhizobacteria. Understanding the specific traits of this strain, including its flagellar motility and genetic composition, can provide insights into its ecological roles and potential utility in scientific and industrial applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas sp. ATCM1_4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas sp. ATCM1_4 Scaffold_8, whole genome shotgun

Gene Summary

Adenine Count

694774 bp

Thymine Count

680558 bp

Guanine Count

1387181 bp

Cytosine Count

1424449 bp

Genome Length

4187822 bp

Protein-coding Genes

3596 genes

Non-Coding Genes

166 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinATCM_17225Not AvailableNegative3785357 - 378648141842.7
hypothetical proteinATCM_17230Not AvailableNegative3786560 - 378830565769.9
abc transporter atp-binding proteinATCM_17235Not AvailableNegative3788368 - 378971448302.0
abc transporter permeaseATCM_17240Not AvailableNegative3789704 - 379048629697.5
cystathionine gamma-synthaseATCM_17245Not AvailableNegative3790533 - 379172342319.8
pyridoxal-phosphate dependent enzymeATCM_17250Not AvailableNegative3791811 - 379318149642.7
duf465 domain-containing proteinATCM_17255Not AvailableNegative3793369 - 37935878434.42
hypothetical proteinATCM_17260Not AvailableNegative3793917 - 379479831257.2
duf4398 domain-containing proteinATCM_17265Not AvailableNegative3794798 - 379518714023.6
pilt/pilu family type 4a pilus atpaseATCM_17270Not AvailablePositive3795286 - 379641641562.4

Displaying genes 3421 – 3430 of 3762 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.