Stenotrophomonas sp. ATCM1_4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas sp. ATCM1_4 is a rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility. This species has a single replicon, indicating a streamlined genetic structure that may facilitate efficient replication and stability within its environment. The genetic information for this strain can be accessed through the accession number QPFB00000000.1, which provides a reference for further studies and comparative analyses. Stenotrophomonas species are known for their resilience and adaptability in various environments, often thriving in soil and aquatic habitats. They play a crucial role in biogeochemical cycles and can influence microbial communities through their interactions. Due to their metabolic versatility, members of this genus can utilize a wide range of organic compounds, contributing to nutrient cycling and ecosystem functioning. The ecological significance of Stenotrophomonas sp. ATCM1_4 may extend to its potential applications in biotechnology and agriculture, particularly in bioremediation or as plant growth-promoting rhizobacteria. Understanding the specific traits of this strain, including its flagellar motility and genetic composition, can provide insights into its ecological roles and potential utility in scientific and industrial applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas sp. ATCM1_4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas sp. ATCM1_4 Scaffold_8, whole genome shotgun

Gene Summary

Adenine Count

694774 bp

Thymine Count

680558 bp

Guanine Count

1387181 bp

Cytosine Count

1424449 bp

Genome Length

4187822 bp

Protein-coding Genes

3596 genes

Non-Coding Genes

166 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4377 domain-containing proteinATCM_00560Not AvailableNegative128903 - 12972129026.6
undecaprenyl-diphosphate phosphataseATCM_00565Not AvailableNegative129805 - 13059928274.1
type i glutamate--ammonia ligaseATCM_00570Not AvailablePositive130816 - 13222551919.9
p-ii family nitrogen regulatorATCM_00575Not AvailablePositive132534 - 13287212012.6
ammonium transporterATCM_00580Not AvailablePositive132894 - 13431848864.0
n-acetylmuramoyl-l-alanine amidaseATCM_00585Not AvailablePositive134426 - 13517227084.0
hypothetical proteinATCM_00590Not AvailableNegative135210 - 13694959451.4
pas domain-containing sensor histidine kinaseATCM_00595Not AvailablePositive137060 - 13810337594.1
nitrogen regulation protein nr(i)ATCM_00600Not AvailablePositive138096 - 13953851714.2
superoxide dismutase family proteinATCM_00605Not AvailablePositive139580 - 14014918637.2

Displaying genes 271 – 280 of 3762 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.