Stenotrophomonas sp. ATCM1_4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas sp. ATCM1_4 is a rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility. This species has a single replicon, indicating a streamlined genetic structure that may facilitate efficient replication and stability within its environment. The genetic information for this strain can be accessed through the accession number QPFB00000000.1, which provides a reference for further studies and comparative analyses. Stenotrophomonas species are known for their resilience and adaptability in various environments, often thriving in soil and aquatic habitats. They play a crucial role in biogeochemical cycles and can influence microbial communities through their interactions. Due to their metabolic versatility, members of this genus can utilize a wide range of organic compounds, contributing to nutrient cycling and ecosystem functioning. The ecological significance of Stenotrophomonas sp. ATCM1_4 may extend to its potential applications in biotechnology and agriculture, particularly in bioremediation or as plant growth-promoting rhizobacteria. Understanding the specific traits of this strain, including its flagellar motility and genetic composition, can provide insights into its ecological roles and potential utility in scientific and industrial applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas sp. ATCM1_4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas sp. ATCM1_4 Scaffold_8, whole genome shotgun

Gene Summary

Adenine Count

694774 bp

Thymine Count

680558 bp

Guanine Count

1387181 bp

Cytosine Count

1424449 bp

Genome Length

4187822 bp

Protein-coding Genes

3596 genes

Non-Coding Genes

166 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptorATCM_11580Not AvailablePositive2528178 - 2530940100200.0
alpha-glucosidaseATCM_11585Not AvailableNegative2531499 - 253311260567.1
octaprenyl-diphosphate synthaseATCM_11590Not AvailablePositive2533293 - 253429135908.9
helix-hairpin-helix domain-containing proteinATCM_11595Not AvailablePositive2534295 - 25345408401.09
dienelactone hydrolase family proteinATCM_11600Not AvailableNegative2534618 - 253541527731.0
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseATCM_11605Not AvailableNegative2535604 - 253701049765.2
endonuclease domain-containing proteinATCM_11610Not AvailableNegative2536991 - 253837350704.6
bifunctional aspartate kinase/diaminopimelate decarboxylaseATCM_11615Not AvailableNegative2538441 - 254104493944.1
phzf family phenazine biosynthesis proteinATCM_11620Not AvailablePositive2541413 - 254228230779.8
phzf family phenazine biosynthesis proteinATCM_11625Not AvailablePositive2542317 - 254317730657.5

Displaying genes 2351 – 2360 of 3762 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.