Stenotrophomonas sp. ATCM1_4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas sp. ATCM1_4 is a rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility. This species has a single replicon, indicating a streamlined genetic structure that may facilitate efficient replication and stability within its environment. The genetic information for this strain can be accessed through the accession number QPFB00000000.1, which provides a reference for further studies and comparative analyses. Stenotrophomonas species are known for their resilience and adaptability in various environments, often thriving in soil and aquatic habitats. They play a crucial role in biogeochemical cycles and can influence microbial communities through their interactions. Due to their metabolic versatility, members of this genus can utilize a wide range of organic compounds, contributing to nutrient cycling and ecosystem functioning. The ecological significance of Stenotrophomonas sp. ATCM1_4 may extend to its potential applications in biotechnology and agriculture, particularly in bioremediation or as plant growth-promoting rhizobacteria. Understanding the specific traits of this strain, including its flagellar motility and genetic composition, can provide insights into its ecological roles and potential utility in scientific and industrial applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas sp. ATCM1_4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas sp. ATCM1_4 Scaffold_8, whole genome shotgun

Gene Summary

Adenine Count

694774 bp

Thymine Count

680558 bp

Guanine Count

1387181 bp

Cytosine Count

1424449 bp

Genome Length

4187822 bp

Protein-coding Genes

3596 genes

Non-Coding Genes

166 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-glyNot AvailableNot AvailablePositive2101076 - 2101151Not Available
cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseATCM_09660Not AvailableNegative2101181 - 210180723425.2
excinuclease abc subunit uvrcATCM_09665Not AvailableNegative2101815 - 210366267301.8
hypothetical proteinATCM_09670Not AvailableNegative2103659 - 210508050919.7
low molecular weight phosphotyrosine protein phosphataseATCM_09675Not AvailableNegative2105077 - 210556217861.1
3-deoxy-manno-octulosonate cytidylyltransferaseATCM_09680Not AvailableNegative2105559 - 210633227216.6
tetraacyldisaccharide 4'-kinaseATCM_09685Not AvailableNegative2106402 - 210742437236.9
lipid a export permease/atp-binding protein msbaATCM_09690Not AvailableNegative2107424 - 210912761862.9
biopolymer transporter exbdATCM_09695Not AvailableNegative2109166 - 210958815536.6
mota/tolq/exbb proton channel family proteinATCM_09700Not AvailableNegative2109595 - 211026023595.3

Displaying genes 1971 – 1980 of 3762 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.